AdvancedInformaticsExercises

Advanced Informatics, Winter 2021

“Textbook”

Lab exercises

Week 1

For this week:

  1. Set up a new repository. The repo name will be AdvancedInformaticsExercises.

  2. The ‘README.md’ file will be the landing point for a website.

  3. Submit a pull request that adds some random text somewhere in the README.md

Hello I was following in class so made the above. This is the random text portion -Johnny Le, 01072020 kasdjfklajsdlfjslkdjfklasjdfkljq

Week 2 R Markdown files

  1. R Markdown

Week 3 R and Python sqlite3

  1. R Markdown

Week 4 Snakemake ~~~SSSSSS

  1. Snakemake files

Week 5 Plots

  1. plots in R
  1. DNA, RNA and ATAC Syms

Week 7 Alignments

  1. DNA, RNA and ATAC Aligned.

Week 8 Merge, Call SNPs, and Read RNA counts

  1. Merge, SNPs, and Reads.

Week 9 Deseq2 and ATACseq

  1. Desq2 and ATACseq

Week 10 FinalProject

  1. Final Project `